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Deploying Wireguard for private mesh networking

Galaxy Server administration

wireguard networking

Deploying Tailscale/Headscale for private mesh networking

Galaxy Server administration

wireguard networking

De novo transcriptome reconstruction with RNA-Seq

Transcriptomics

Mallory Freeberg, Mo Heydarian

Mapping and molecular identification of phenotype-causing mutations

Variant Analysis

Wolfgang Maier

Visualize Climate data with Panoply netCDF viewer

Climate

interactive-tools

Anne Fouilloux

Mass spectrometry: LC-MS analysis

Metabolomics

Mélanie Petera, Gildas Le Corguillé, Jean-François Martin, Yann Guitton, Workflow4Metabolomics core team

RAD-Seq de-novo data analysis

Ecology

RAD-seq Genetic composition EBV class Species populations EBV class EBV dataset EBV workflow

Yvan Le Bras

Identification of somatic and germline variants from tumor and normal sample pairs

Variant Analysis

Wolfgang Maier

Proteogenomics 3: Novel peptide analysis

Proteomics

proteogenomics

Subina Mehta, Timothy J. Griffin, Pratik Jagtap, Ray Sajulga, James Johnson, Praveen Kumar

Downloading and Deleting Data in Galaxy

Using Galaxy and Managing your Data

Simon Gladman, Helena Rasche

RAD-Seq Reference-based data analysis

Ecology

RAD-seq Genetic composition EBV class Species population EBV class EBV dataset EBV workflow

Yvan Le Bras

Compute and analyze biodiversity metrics with PAMPA toolsuite

Ecology

Species population EBV class Community composition EBV class EBV dataset EBV workflow modeling

Coline Royaux, Yvan Le Bras, Jean-Baptiste Mihoub

Mass spectrometry: LC-MS preprocessing with XCMS

Metabolomics

Mélanie Petera, Jean-François Martin, Gildas Le Corguillé, Workflow4Metabolomics core team

metaQuantome 2: Function

Proteomics

microbiome

Subina Mehta, Timothy J. Griffin, Pratik Jagtap, Emma Leith, Marie Crane, Praveen Kumar

Biodiversity data exploration

Ecology

taxonomic data data quality

Olivier Norvez, Marie Josse, Coline Royaux, Yvan Le Bras

Understanding Barcodes

Transcriptomics

single-cell

Mehmet Tekman

From small to large-scale genome comparison

Genome Annotation

Esteban Perez-Wohlfeil

ATAC-Seq data analysis

Epigenetics

Lucille Delisle, Maria Doyle, Florian Heyl

Mass spectrometry: LC-MS data processing

Metabolomics

Mélanie Petera, Workflow4Metabolomics core team

Mass spectrometry imaging: Loading and exploring MSI data

Proteomics

mouse imaging

Melanie Föll, Björn Grüning

Trajectory Analysis using Monocle3

Transcriptomics

single-cell trajectory-analysis paper-replication

Deep Learning (Part 2) - Recurrent neural networks (RNN)

Statistics and machine learning

Kaivan Kamali

VGP assembly pipeline

Assembly

pacbio eukaryote VGP

Delphine Lariviere, Alex Ostrovsky, Cristóbal Gallardo, Anna Syme, Linelle Abueg, Brandon Pickett, Giulio Formenti, Marcella Sozzoni